- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.449:Phosphoenolpyruvate Carboxykinase; domain 1
- Homology: 3.40.449.10:Phosphoenolpyruvate Carboxykinase, domain 1
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1aq2 | [A] | [A] | [A] | 1.9 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION MN:MANGANESE (II) ION PYR:PYRUVIC ACID | |||
1ayl | [A] | [A] | [A] | 1.8 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION OXL:OXALATE ION | |||
1ii2 | [A2] | [A2] | [A2] | 2 | SO4:SULFATE ION | |||
1j3b | [A2] | [A2] | [A2] | 2 | CA:CALCIUM ION GOL:GLYCEROL PO4:PHOSPHATE ION | |||
1k3c | [A] | [A] | [A] | 2 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE AF3:ALUMINUM FLUORIDE MG:MAGNESIUM ION PYR:PYRUVIC ACID | |||
1k3d | [A] | [A] | [A] | 2 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE AF3:ALUMINUM FLUORIDE MG:MAGNESIUM ION | |||
1khb | [A] | [A] | [A] | 1.85 | ACT:ACETATE ION EDO:1,2-ETHANEDIOL GCP:PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER MN:MANGANESE (II) ION | |||
1khe | [A] | [A] | [A] | 2.4 | GCP:PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER MN:MANGANESE (II) ION MSE:SELENOMETHIONINE | |||
1khf | [A] | [A] | [A] | 2.02 | EDO:1,2-ETHANEDIOL MN:MANGANESE (II) ION NA:SODIUM ION PEP:PHOSPHOENOLPYRUVATE | |||
1khg | [A] | [A] | [A] | 2.34 | EDO:1,2-ETHANEDIOL MN:MANGANESE (II) ION | |||
1m51 | [A] | [A] | [A] | 2.25 | ACT:ACETATE ION EDO:1,2-ETHANEDIOL MN:MANGANESE (II) ION TSX:N-[4-(1-ALLYL-3-BUTYL-2,6-DIOXO-2,3,6,7-TETRAHYDRO-1H-PURIN-8-YLMETHYL)-PHENYL]-ACETAMIDE | |||
1nhx | [A] | [A] | [A] | 2.1 | EDO:1,2-ETHANEDIOL FTB:N-{4-[1-(2-FLUOROBENZYL)-3-BUTYL-2,6-DIOXO-2,3,6,7-TETRAHYDRO-1H-PURIN-8-YLMETHYL]-PHENYL}-ACETAMIDE MN:MANGANESE (II) ION NA:SODIUM ION PEP:PHOSPHOENOLPYRUVATE | |||
1oen | [A] | [A] | [A] | 1.9 | ACT:ACETATE ION | |||
1os1 | [A] | [A] | [A] | 1.8 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE CA:CALCIUM ION MG:MAGNESIUM ION PYR:PYRUVIC ACID | |||
1xkv | [A2] | [A2] | [A2] | 2.2 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE CA:CALCIUM ION GOL:GLYCEROL PO4:PHOSPHATE ION | |||
1ygg | [A] | [A] | [A] | 1.85 | NA:SODIUM ION SO4:SULFATE ION | |||
1ylh | [A] | [A] | [A] | 1.7 | BME:BETA-MERCAPTOETHANOL DT3:(2S,3S)-2,3-DIHYDROXY-4-SULFANYLBUTANE-1-SULFONATE FMT:FORMIC ACID MN:MANGANESE (II) ION PO4:PHOSPHATE ION PYR:PYRUVIC ACID | |||
1ytm | [A] | [A] | [A] | 2.2 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION MN:MANGANESE (II) ION OXD:OXALIC ACID | |||
1yvy | [A] | [A] | [A] | 2.35 | ||||
2faf | [A] | [A] | [A] | 1.7 | 1PE:PENTAETHYLENE GLYCOL EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID FRU:BETA-D-FRUCTOFURANOSE MN:MANGANESE (II) ION TQY:6-O-OCTANOYL-ALPHA-D-GLUCOPYRANOSE | |||
2fah | [A] | [A] | [A] | 2.09 | FRU:BETA-D-FRUCTOFURANOSE GDP:GUANOSINE-5___sq___-DIPHOSPHATE MLA:MALONIC ACID MN:MANGANESE (II) ION TQY:6-O-OCTANOYL-ALPHA-D-GLUCOPYRANOSE | |||
2gmv | [A] | [A] | [A] | 2.3 | MN:MANGANESE (II) ION PEP:PHOSPHOENOLPYRUVATE UN8:N-(4-{[3-BUTYL-1-(2-FLUOROBENZYL)-2,6-DIOXO-2,3,6,7-TETRAHYDRO-1H-PURIN-8-YL]METHYL}PHENYL)-1-METHYL-1H-IMIDAZOLE-4-SULFONAMIDE | |||
2olq | [A] | [A] | [A] | 1.94 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE CO2:CARBON DIOXIDE MG:MAGNESIUM ION MN:MANGANESE (II) ION | |||
2olr | [A] | [A] | [A] | 1.6 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE CL:CHLORIDE ION CO2:CARBON DIOXIDE MG:MAGNESIUM ION | |||
2pc9 | [A] | [A] | [A] | 2.4 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE CA:CALCIUM ION PO4:PHOSPHATE ION | |||
2pxz | [A] | [A] | [A] | 2.23 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE CO2:CARBON DIOXIDE MG:MAGNESIUM ION MN:MANGANESE (II) ION OAA:OXALOACETATE ION | |||
2py7 | [A] | [A] | [A] | 2.2 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION MN:MANGANESE (II) ION | |||
2qew | [A] | [A] | [A] | 1.8 | MN:MANGANESE (II) ION NA:SODIUM ION | |||
2qey | [A] | [A] | [A] | 1.9 | EDO:1,2-ETHANEDIOL GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION | |||
2qf1 | [A] | [A] | [A] | 1.8 | MN:MANGANESE (II) ION NA:SODIUM ION OAA:OXALOACETATE ION | |||
2qf2 | [A] | [A] | [A] | 1.65 | GDP:GUANOSINE-5___sq___-DIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION OAA:OXALOACETATE ION PYR:PYRUVIC ACID | |||
2qzy | [A] | [A] | [A] | 1.9 | EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID FRU:BETA-D-FRUCTOFURANOSE MN:MANGANESE (II) ION PEP:PHOSPHOENOLPYRUVATE TQY:6-O-OCTANOYL-ALPHA-D-GLUCOPYRANOSE | |||
2rk7 | [A] | [A] | [A] | 1.9 | MN:MANGANESE (II) ION NA:SODIUM ION OXL:OXALATE ION | |||
2rk8 | [A] | [A] | [A] | 2 | FMT:FORMIC ACID MN:MANGANESE (II) ION NA:SODIUM ION PEG:DI(HYDROXYETHYL)ETHER PPF:PHOSPHONOFORMIC ACID | |||
2rka | [A] | [A] | [A] | 1.95 | MN:MANGANESE (II) ION NA:SODIUM ION PGA:2-PHOSPHOGLYCOLIC ACID | |||
2rkd | [A] | [A] | [A] | 1.9 | 3PP:3-PHOSPHONOPROPANOIC ACID MN:MANGANESE (II) ION NA:SODIUM ION | |||
2rke | [A] | [A] | [A] | 1.8 | MN:MANGANESE (II) ION NA:SODIUM ION SAT:SULFOACETIC ACID SO4:SULFATE ION | |||
2zci | [A2] | [A2] | [A2] | 2.3 | ||||
3dt2 | [A] | [A] | [A] | 1.5 | 1PE:PENTAETHYLENE GLYCOL GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION OXL:OXALATE ION | |||
3dt4 | [A] | [A] | [A] | 1.45 | 1PE:PENTAETHYLENE GLYCOL GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION OXL:OXALATE ION | |||
3dt7 | [A] | [A] | [A] | 1.5 | 1PE:PENTAETHYLENE GLYCOL ETX:2-ETHOXYETHANOL GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION SPV:SULFOPYRUVATE | |||
3dtb | [A] | [A] | [A] | 1.3 | 1PE:PENTAETHYLENE GLYCOL BCT:BICARBONATE ION EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID GDP:GUANOSINE-5___sq___-DIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION PGA:2-PHOSPHOGLYCOLIC ACID | |||
3moe | [A] | [A] | [A] | 1.25 | 1PE:PENTAETHYLENE GLYCOL EDO:1,2-ETHANEDIOL GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION SPV:SULFOPYRUVATE | |||
3mof | [A] | [A] | [A] | 1.75 | 1PE:PENTAETHYLENE GLYCOL EDO:1,2-ETHANEDIOL GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION OXL:OXALATE ION | |||
3moh | [A] | [A] | [A] | 2.1 | 1PE:PENTAETHYLENE GLYCOL EDO:1,2-ETHANEDIOL GDP:GUANOSINE-5___sq___-DIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION PGA:2-PHOSPHOGLYCOLIC ACID | |||
4gmm | [A] | [A] | [A] | 1.74 | GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION SPV:SULFOPYRUVATE | |||
4gmu | [A] | [A] | [A] | 1.2 | GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION OXL:OXALATE ION | |||
4gmw | [A] | [A] | [A] | 1.75 | GDP:GUANOSINE-5___sq___-DIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION PEP:PHOSPHOENOLPYRUVATE | |||
4gmz | [A] | [A] | [A] | 2.05 | GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION SPV:SULFOPYRUVATE | |||
4gnl | [A] | [A] | [A] | 1.7 | GDP:GUANOSINE-5___sq___-DIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION PEP:PHOSPHOENOLPYRUVATE | |||
4gnm | [A] | [A] | [A] | 1.5 | GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION OXL:OXALATE ION | |||
4gno | [A] | [A] | [A] | 1.5 | 1PE:PENTAETHYLENE GLYCOL GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION SPV:SULFOPYRUVATE | |||
4gnp | [A] | [A] | [A] | 1.74 | GDP:GUANOSINE-5___sq___-DIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION PEP:PHOSPHOENOLPYRUVATE | |||
4gnq | [A] | [A] | [A] | 1.4 | GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION OXL:OXALATE ION | |||
4ox2 | [A] | [A] | [A] | 2 | 1PE:PENTAETHYLENE GLYCOL ETX:2-ETHOXYETHANOL GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION SPV:SULFOPYRUVATE | |||
4r43 | [A] | [A] | [A] | 1.8 | GDP:GUANOSINE-5___sq___-DIPHOSPHATE MN:MANGANESE (II) ION PEG:DI(HYDROXYETHYL)ETHER PO4:PHOSPHATE ION | |||
4rcg | [A] | [A] | [A] | 2.6 | GDP:GUANOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION PEG:DI(HYDROXYETHYL)ETHER | |||
4wie | [A] | [A] | [A] | 2.18 | GOL:GLYCEROL MN:MANGANESE (II) ION | |||
4wiu | [A] | [A] | [A] | 2.02 | GOL:GLYCEROL MN:MANGANESE (II) ION OXL:OXALATE ION | |||
4wl8 | [A] | [A] | [A] | 1.61 | GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER GOL:GLYCEROL MN:MANGANESE (II) ION | |||
4wou | [A] | [A] | [A] | 2.12 | GDP:GUANOSINE-5___sq___-DIPHOSPHATE GOL:GLYCEROL MN:MANGANESE (II) ION PO4:PHOSPHATE ION ZN:ZINC ION | |||
4wpt | [A] | [A] | [A] | 1.6 | GOL:GLYCEROL PEP:PHOSPHOENOLPYRUVATE PO4:PHOSPHATE ION | |||
4wpu | [A] | [A] | [A] | 2.26 | GDP:GUANOSINE-5___sq___-DIPHOSPHATE GOL:GLYCEROL PEP:PHOSPHOENOLPYRUVATE | |||
4wpv | [A] | [A] | [A] | 1.67 | GOL:GLYCEROL PO4:PHOSPHATE ION ZN:ZINC ION | |||
4yw8 | [A] | [A] | [A] | 1.55 | 1WD:3-SULFANYLPYRIDINE-2-CARBOXYLIC ACID EDO:1,2-ETHANEDIOL MEE:METHANETHIOL MN:MANGANESE (II) ION MOH:METHANOL NA:SODIUM ION | |||
4yw9 | [A] | [A] | [A] | 1.4 | 1PE:PENTAETHYLENE GLYCOL 1WD:3-SULFANYLPYRIDINE-2-CARBOXYLIC ACID GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION MOH:METHANOL NA:SODIUM ION | |||
4ywb | [A] | [A] | [A] | 1.5 | 1WD:3-SULFANYLPYRIDINE-2-CARBOXYLIC ACID CL:CHLORIDE ION MN:MANGANESE (II) ION NA:SODIUM ION OXD:OXALIC ACID | |||
4ywd | [A] | [A] | [A] | 2.1 | MN:MANGANESE (II) ION NA:SODIUM ION NTM:QUINOLINIC ACID | |||
5fh0 | [A] | [A] | [A] | 1.6 | EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION | |||
5fh1 | [A] | [A] | [A] | 1.55 | EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION | |||
5fh2 | [A] | [A] | [A] | 1.49 | EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION | |||
5fh3 | [A] | [A] | [A] | 1.6 | GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION OXL:OXALATE ION | |||
5fh4 | [A] | [A] | [A] | 1.49 | EDO:1,2-ETHANEDIOL GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION SPV:SULFOPYRUVATE | |||
5fh5 | [A] | [A] | [A] | 1.55 | GDP:GUANOSINE-5___sq___-DIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION PGA:2-PHOSPHOGLYCOLIC ACID | |||
5i67 | [A] | [A] | [A] | 2.6 | GDP:GUANOSINE-5___sq___-DIPHOSPHATE MN:MANGANESE (II) ION PEG:DI(HYDROXYETHYL)ETHER | |||
5v95 | [A] | [A] | [A] | 2.3 | MN:MANGANESE (II) ION NA:SODIUM ION | |||
5v97 | [A] | [A] | [A] | 1.8 | GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION | |||
5v9f | [A] | [A] | [A] | 2.05 | GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION SPV:SULFOPYRUVATE | |||
5v9g | [A] | [A] | [A] | 1.95 | GTP:GUANOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION OXL:OXALATE ION | |||
5v9h | [A] | [A] | [A] | 2.15 | 1PE:PENTAETHYLENE GLYCOL GDP:GUANOSINE-5___sq___-DIPHOSPHATE MN:MANGANESE (II) ION NA:SODIUM ION PGA:2-PHOSPHOGLYCOLIC ACID | |||
6asi | [A] | [A] | [A] | 1.79 | 03S:METHANESULFONIC ACID ATP:ADENOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION MN:MANGANESE (II) ION | |||
6asm | [A] | [A] | [A] | 1.55 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL MG:MAGNESIUM ION MN:MANGANESE (II) ION THJ:THIOSULFATE XE:XENON | |||
6asn | [A] | [A] | [A] | 1.55 | 03S:METHANESULFONIC ACID SO4:SULFATE ION | |||
6at2 | [A] | [A] | [A] | 1.44 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION MN:MANGANESE (II) ION THJ:THIOSULFATE TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
6at3 | [A2] | [A2] | [A2] | 1.46 | OAA:OXALOACETATE ION THJ:THIOSULFATE | |||
6at4 | [A] | [A] | [A] | 1.33 | THJ:THIOSULFATE | |||
6com | [A] | [A] | [A] | 2.3 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE CA:CALCIUM ION MG:MAGNESIUM ION PYR:PYRUVIC ACID | |||
6crt | [A] | [A] | [A] | 2 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE MN:MANGANESE (II) ION |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA